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This is the supplementary data for Gloor, Martin, Wahl and Dunn (Biochemistry. 2005 May 17;44(19):7156-65)
You can move to the supplementary data for Martin, Gloor, Dunn, Wahl (Bioinformatics, submitted) by clicking this link.
List of currently online files
- SummaryStats (look here for distance data)
- AlignmentSummaryData
- MIimages
- MethodologyDescription
- SupplementaryTable1 (information on protein families from the COG database)
- DataFormat for the files
- ListOfMIFiles
- ListOfLinkFiles
- ListOfDotFiles
- ListOfPerls
- WhyHCutoff
Useable alignments
- ChorismateSynthase (look here for a full explanation of the method, the others only have the final files))
- GuanylateKinase (full description) (Biochem)
- ATPSynthaseEpsilon (Biochem)
- Glyceraldehyde3PhosphateDehydrogenase (Biochem)
- HomeoDomain (Biochem)
- IntegrationHostFactor (Biochem)
- LactateDehydrogenase (includes MDH of the LDH type) (Biochem)
- MethionineAminoPeptidase1 (Biochem)
- SAICAR (Biochem)
- Indole3GlycerolPhosphateSynthase (Biochem)
- PeptidyltRNAHydrolase (Biochem)
- SerineHydroxymethylTransferase (Biochem)
- PhosphoglycerateKinase (Biochem)
- RNAseHII (Biochem)
- TriosePhosphateIsomerase (tim) (BI, Biochem)
- EnoLase (BI, Biochem)
- AdenyloSuccinateSynthase (BI, Biochem)
- NucleotideDiphosphateKinase (BI, Biochem)
- Orotidine5MonophosphateDecarboxylase (BI, Biochem)
- InorganicPyrophosphatase (BI, Biochem)
- DihydropterOateSynthase (BI, Biochem)
- UndecaprenylPyrophosphateSynthase (BI, Biochem)
- CycloPhilin
For Murray Junop
You will need Graphviz to view the connectivity graphs
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