Useful Links

                   Mass Spectrometry and Proteomics

  Collection of Proteomics Tools

  i-mass Guides: Mass Spectrometry's Information Resource

  Mass Spectrometry and Biotechnology Resource

  Proteomics Tools: from MUSC

  University of Washington YRC Mass Spectrometry

  Dr. John Yates's Lab home page

  Vanderbilt University Mass Spectrometry Research Center

  Samuel Lunenfeld Research Institute Proteomics

  European Molecular Biology Laboratory (EMBL) Proteomics Visitor Facility

  Mass Spectrometry and Protein Analysis Lab. in University of New South Wales

  Dr. A. Emili's Lab home page

  Dr. R. Aebersold's Lab home page

  Dr. B. Chait's Lab home page

  Dr. M. Mann's Lab home page

  Dr. S. P. Gygi's Lab home page

  UCSF Mass Spectrometry Facility

                  Search Engine providing peptide mapping for protein identification

  PEAKS: including de-novo sequencing and database search, from Bioinformatics Solutions Inc.

  MASCOT : from Matrix Science, including: Peptide Mass Fingerprint, Sequence Query, and MS/MS Ion Search.

  PROSPECTOR: MS-fit

  EMBL: PeptideSearch

  PepMAPPER

  ProFound: from Gemomic Solution for Mass Fingerprint

  MS-Fit and MS-Isotope from the UCSF Mass Spectrometry Facility

  MOWSE: will search the owl protein sequence database with protein fragment information, and return the protein(s) which most likely correspond to your peptide-data.

  PeptideSearch: from European Molecular Biology Laboratory (EMBL) in Heidelberg, Germany.

  FindMod Tool: is a tool that can predict potential protein post-translational modifications (PTM) and find potential single amino acid substitutions in peptides.

  CBS Prediction Servers: NetNGlyc NetOGlyc NetPhos

            Protocols

  Protocols for the preparation of samples from NCRR Yeast Resource Center

  User Guidelines For Sample Preparation from SLRI Proteomics Database

            Protein Databases

  UniProt: a curated protein sequence database that provides a high level of annotation, a minimal  level of redundancy and high level of integration with other databases.

  SwissProt fasta format database ftp site

  OWL: Composite Protein Sequence Database

  NCBI: A collection of protein sequence entries compiled from a variety of sources including  SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and  RefSeq.

  NCBI fasta format database ftp site

    Mass Spectrum Deconvolution

  Maximum Entropy: for ESI Mass Spectrometry. QPeaks

  ReSpect Home Page

   Bioinformatics Organization

  Genomic Solutions : Proteometrics USA

  Bioinformatics Solutions Inc: PEAKS, Pattern Hunter, and PROSPECT

  Micromass Home

    Others

  Outline of proteomics by 2D Gels

  BLAST

  PubMed/MEDLINE

  Heuristic Methods for Fast Database Searches: FastA & BLAST (questions/answers)

  Sequence Formats: introduction to different protein or DNA sequence formats and converting programs
  ExPASy Molecular Biology Server

  NCBI Taxonomy Browser

  Translate Tool: translation of a nucleotide (DNA/RNA) sequence to a protein sequence.

  Expasy: Molecular Biology Server

  Proteomics Tools

  Prowl

  Spectroscopy Now (General Tools and Links)

  Pedro's Biomolecular Research Tools

  MARS (Toronto)

  Genome Canada

  Ontario Genomics Institute

Useful Links in UWO Only

  UWO Taylor Library

  UWO Taylor Library Chemistry Links

  UWO Taylor Library Biochemistry Links

  CRC Handbook of Chemistry and Physics